cyvcf2 VS chatnoir-resiliparse

Compare cyvcf2 vs chatnoir-resiliparse and see what are their differences.

cyvcf2

cython + htslib == fast VCF and BCF processing (by brentp)
Vcf Htslib Cython Genomics Bioinformatics
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chatnoir-resiliparse

A robust web archive analytics toolkit (by chatnoir-eu)
Python Web warc Bigdata Cython CPP extraction webarchive Htmlparser
Source Code
resiliparse.chatnoir.eu
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cyvcf2 chatnoir-resiliparse
1 2
358 43
- -
7.7 7.5
2 months ago 15 days ago
Cython Cython
MIT License Apache License 2.0
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cyvcf2

Posts with mentions or reviews of cyvcf2. We have used some of these posts to build our list of alternatives and similar projects.

chatnoir-resiliparse

Posts with mentions or reviews of chatnoir-resiliparse. We have used some of these posts to build our list of alternatives and similar projects.
  • Selenium over scrapy
    1 project | /r/Python | 4 May 2023
    bs4 is a little slow, try https://github.com/chatnoir-eu/chatnoir-resiliparse, it's faster for working with the dom written in cython and based on lexbor (written in C and very fast)
  • Would I ever need anything besides Python (not pro)
    1 project | /r/Python | 1 Nov 2022
    I've been working on this for the last several days, and learning a lot. I'm actually moving away from dask to python multiprocessing, the overhead for extremely fast functions written in cython seems to slow it down when added to a dask task graph sometimes more than running sequentially. At least that's what experiments are showing, https://github.com/chatnoir-eu/chatnoir-resiliparse/issues/23

What are some alternatives?

When comparing cyvcf2 and chatnoir-resiliparse you can also consider the following projects:

pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Streaming multipart/form-data parser - Streaming (and fast!) parser for multipart/form-data written in Cython

htslib - C library for high-throughput sequencing data formats

PySCIPOpt - Python interface for the SCIP Optimization Suite

truvari - Structural variant toolkit for VCFs

pyimgui - Cython-based Python bindings for dear imgui

hts.cr - HTSlib bindings for Crystal

cymem - 💥 Cython memory pool for RAII-style memory management

ruby-htslib - HTSlib bindings for Ruby

Cython - The most widely used Python to C compiler

Hail - Cloud-native genomic dataframes and batch computing

preshed - 💥 Cython hash tables that assume keys are pre-hashed

cyvcf2 vs pyrodigal chatnoir-resiliparse vs Streaming multipart/form-data parser cyvcf2 vs htslib chatnoir-resiliparse vs PySCIPOpt cyvcf2 vs truvari chatnoir-resiliparse vs pyimgui cyvcf2 vs hts.cr chatnoir-resiliparse vs cymem cyvcf2 vs ruby-htslib chatnoir-resiliparse vs Cython cyvcf2 vs Hail chatnoir-resiliparse vs preshed