cyvcf2
cython + htslib == fast VCF and BCF processing (by brentp)
ruby-htslib
HTSlib bindings for Ruby (by kojix2)
cyvcf2 | ruby-htslib | |
---|---|---|
1 | 1 | |
358 | 8 | |
- | - | |
7.7 | 6.6 | |
2 months ago | 12 days ago | |
Cython | Ruby | |
MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cyvcf2
Posts with mentions or reviews of cyvcf2.
We have used some of these posts to build our list of alternatives
and similar projects.
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How can I index and query my VCF files by an INFO tag?
If you in command line, bcftools. If in python, https://github.com/brentp/cyvcf2
ruby-htslib
Posts with mentions or reviews of ruby-htslib.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-07-26.
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ffi-bitfield
I'm working on a bioinformatics-related binding called ruby-htslib. htslib makes heavy use of bit fields throughout the library, so supporting bit fields is inevitable.
What are some alternatives?
When comparing cyvcf2 and ruby-htslib you can also consider the following projects:
pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
ffi - Ruby FFI
htslib - C library for high-throughput sequencing data formats
ffi-bitfield - Bit field for Ruby-FFI
chatnoir-resiliparse - A robust web archive analytics toolkit
sambamba - Tools for working with SAM/BAM data
truvari - Structural variant toolkit for VCFs
hts.cr - HTSlib bindings for Crystal
Hail - Cloud-native genomic dataframes and batch computing
bam-filter - Use simple expressions to filter a BAM/CRAM file