megahit
Ultra-fast and memory-efficient (meta-)genome assembler (by voutcn)
GenomicSQLite
Genomics Extension for SQLite (by mlin)
Our great sponsors
| megahit | GenomicSQLite | |
|---|---|---|
| 1 | 1 | |
| 448 | 137 | |
| - | - | |
| 0.0 | 4.7 | |
| about 1 month ago | 27 days ago | |
| C++ | C++ | |
| GNU General Public License v3.0 only | Apache License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
megahit
Posts with mentions or reviews of megahit.
We have used some of these posts to build our list of alternatives
and similar projects.
We haven't tracked posts mentioning megahit yet.
Tracking mentions began in Dec 2020.
GenomicSQLite
Posts with mentions or reviews of GenomicSQLite.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-07-31.
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sqlite-zstd: Transparent dictionary-based row-level compression for SQLite - An SQLite extension written in Rust to reduce the database size without losing functionality
Yes, that is indeed an obviously missing part. I knew about ZIPVFS, but somehow forgot to investigate closer. Probably because I started this project before GenomicsSQLite was a thing (that seems like the best alternative).
What are some alternatives?
When comparing megahit and GenomicSQLite you can also consider the following projects:
hap.py - Haplotype VCF comparison tools
FlatBuffers - FlatBuffers: Memory Efficient Serialization Library
seq - A high-performance, Pythonic language for bioinformatics
bowtie2 - A fast and sensitive gapped read aligner
bwa-mem2 - The next version of bwa-mem
bowtie - An ultrafast memory-efficient short read aligner
octopus - Bayesian haplotype-based mutation calling