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A Python-based programming language for high-performance computational genomics
> Seq is a Python-compatible language, and the vast majority of Python programs should work without any modifications
The programming language itself and all documentation can be found at https://seq-lang.org/ .
Hacker News top posts: Sep 15, 2021
3 projects | reddit.com/r/hackerdigest | 15 Sep 2021
Seq: A programming language for high-performance computational genomics\ (17 comments)
Seq: A programming language for high-performance computational genomics
9 projects | news.ycombinator.com | 15 Sep 2021
They support both, and will deprecate Python 2 style soon.9 projects | news.ycombinator.com | 15 Sep 2021
What are some alternatives?
Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).
wyng-backup - Fast Time Machine-like backups for logical volumes & disk images
edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
bowtie2 - A fast and sensitive gapped read aligner
TensorComprehensions - A domain specific language to express machine learning workloads.
bioconda-recipes - Conda recipes for the bioconda channel.
Biopython - Official git repository for Biopython (originally converted from CVS)
adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
qore - Qore Programming Language
seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang
GenomicSQLite - Genomics Extension for SQLite