GenomicSQLite VS seq

Compare GenomicSQLite vs seq and see what are their differences.

GenomicSQLite

Genomics Extension for SQLite (by mlin)
Sqlite Sqlite3 Bioinformatics Genomics sequencing
Source Code
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seq

A high-performance, Pythonic language for bioinformatics (by seq-lang)
Bioinformatics computational-biology Genomics programming-language Domain-specific language Compiler Python

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GenomicSQLite seq
1 15
152 634
- -
3.4 0.7
4 months ago over 1 year ago
C++ C++
Apache License 2.0 Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

GenomicSQLite

Posts with mentions or reviews of GenomicSQLite. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-07-31.

seq

Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

What are some alternatives?

When comparing GenomicSQLite and seq you can also consider the following projects:

FlatBuffers - FlatBuffers: Memory Efficient Serialization Library

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

hap.py - Haplotype VCF comparison tools

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

bwa-mem2 - The next version of bwa-mem

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

wyng-backup - Fast Time Machine-like backups for logical volumes & disk images

Biopython - Official git repository for Biopython (originally converted from CVS)

bowtie2 - A fast and sensitive gapped read aligner

seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang

qore - Qore Programming Language

GenomicSQLite vs FlatBuffers seq vs Nim GenomicSQLite vs hap.py seq vs adam GenomicSQLite vs bwa-mem2 seq vs edlib GenomicSQLite vs megahit seq vs wyng-backup seq vs Biopython seq vs bowtie2 seq vs seq-genomics seq vs qore