Top 4 C++ sequencing Projects
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Project mention: Bitfield Audio – Teenage Engineer OP-1 Inspired Synth | news.ycombinator.com | 2023-04-27
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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
fastp + multiQC + Salmon + DESeq2 all some nextflow workflow. It is a good exercise (not complicated) to create the pipeline from scratch the first time to properly understand each tool.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
The latest post mention was on 2023-12-09.
Index
What are some of the best open-source sequencing projects in C++? This list will help you:
Project | Stars | |
---|---|---|
1 | OTTO | 2,609 |
2 | fastp | 1,751 |
3 | GenomicSQLite | 152 |
4 | deML | 45 |
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