graphlan
High-quality circular representations of taxonomic and phylogenetic trees (by biobakery)
phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes (by biobakery)
| graphlan | phylophlan | |
|---|---|---|
| 1 | 1 | |
| 92 | 132 | |
| - | 3.0% | |
| 3.0 | 6.5 | |
| 5 months ago | 29 days ago | |
| Python | Python | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
graphlan
Posts with mentions or reviews of graphlan.
We have used some of these posts to build our list of alternatives
and similar projects.
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How would one code a graphic, chronogramatic display, of a timeline in concentric circles, instead of linear parallels? Alternately, a spiral, with "phase" giving "day and month"?
In fact, the more I think about it, the more I can see diagrams that it would make some amount of sense to wrap around in circles, flowing from a "core" to an "outside". Exergy diagrams, for example (Sankey, but wrapped around). Certain hierarchies/dendograms, we do talk a lot about "the inner circle" and the "center of power" as much as "the top rung" (this is commonly done with taxonomies, I understand). Growth phases, accident fallouts... but those are basically timelines too.
phylophlan
Posts with mentions or reviews of phylophlan.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-16.
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PhyloPhlAN Tutorial?
I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.
What are some alternatives?
When comparing graphlan and phylophlan you can also consider the following projects:
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
pyCircos - python Circos
python-mini-projects - A collection of simple python mini projects to enhance your python skills
empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis
taxopedia - Taxonomic trees (cladograms) from Wikipedia-scraped data.
biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
sherlock - Hunt down social media accounts by username across social networks