gggenomes
A grammar of graphics for comparative genomics (by thackl)
patchwork
The Composer of ggplots (by thomasp85)
Our great sponsors
| gggenomes | patchwork | |
|---|---|---|
| 3 | 7 | |
| 550 | 2,390 | |
| - | - | |
| 8.6 | 7.5 | |
| about 2 months ago | about 1 month ago | |
| R | R | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gggenomes
Posts with mentions or reviews of gggenomes.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-09-10.
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Software to make in-scale illustrations of genomic locations
If you’re R proficient, gggenomes: https://github.com/thackl/gggenomes
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pyGenomeViz: A genome visualization python package for comparative genomics
In R, there are a wide variety of packages that provide APIs for genome visualization, such as genoPlotR and gggenomes.
- Whole genome synteny plots
patchwork
Posts with mentions or reviews of patchwork.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-19.
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What is your favorite piece if Technogy or R package which you wish you would have discovered earlier ?
patchwork and ggrepel
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What is this chart type called? I’d like to recreate something similar in ggplot but I’m not sure what to Google for the code. Thanks guys
3 waffle charts, patched together with patchwork https://patchwork.data-imaginist.com/
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Dynamic subplot layout on Jupyter-lab
Here, I developed patchworklib that allows users to arrange subplots dynamically and determine the best layout from the multiple layouts. Patchworklib is inspired by patchwork library for R ggplot2, so it enables designing subplot layouts with only / and | operators.
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Pathcworklib: A subplot manager for intuitive layout in matplotlib
So, I developed patchworklib inspired by the patchwork library for R. With patchwroklib, after creating individual plots, you can quickly design multiple layouts combining them and select the best one among them.
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How to combine multiple figures together into one larger figure? What package is good for this?
There https://patchwork.data-imaginist.com
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Quick Tutorial: How to Create Side-by-Side Plots in ggplot2
The author of patchwork offers some justification for the package here compared to other R packages that facilitate the plotting of ggplot objects (e.g., gridExtra, cowplot). The syntax appears to be simpler than creating matrices to specify layouts as in gridExtra, but the examples given on the GitHub page don't really demonstrate how the package deals with the more complex layouts that are possible in gridExtra.
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Has anyone ever "tied" two graphs together in R?
Try the patchwork package which lets you glue graphs together. Amazing stuff!
What are some alternatives?
When comparing gggenomes and patchwork you can also consider the following projects:
gggenes - ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
echarts4r - 🐳 ECharts 5 for R
pyGenomeViz - A genome visualization python package for comparative genomics
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
gganimate - A Grammar of Animated Graphics
orthologr - Genome wide orthology inference and dNdS estimation
ggvenn - Venn Diagram by ggplot2, with really easy-to-use API.
Synima - Synteny Imager
complex-upset - A library for creating complex UpSet plots with ggplot2 geoms
redotable - A dotplot application for DNA/RNA sequence
UpSetR - An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..