gggenomes
A grammar of graphics for comparative genomics (by thackl)
orthologr
Genome wide orthology inference and dNdS estimation (by drostlab)
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| gggenomes | orthologr | |
|---|---|---|
| 3 | 1 | |
| 550 | 82 | |
| - | - | |
| 8.6 | 7.3 | |
| about 2 months ago | 7 months ago | |
| R | R | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gggenomes
Posts with mentions or reviews of gggenomes.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-09-10.
-
Software to make in-scale illustrations of genomic locations
If you’re R proficient, gggenomes: https://github.com/thackl/gggenomes
-
pyGenomeViz: A genome visualization python package for comparative genomics
In R, there are a wide variety of packages that provide APIs for genome visualization, such as genoPlotR and gggenomes.
- Whole genome synteny plots
orthologr
Posts with mentions or reviews of orthologr.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Calculating Ka/Ks (dN/dS) ratio recommendations?
https://github.com/drostlab/orthologr this will help
What are some alternatives?
When comparing gggenomes and orthologr you can also consider the following projects:
gggenes - ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
awesome-R - A curated list of awesome R packages, frameworks and software.
pyGenomeViz - A genome visualization python package for comparative genomics
ggplot2 - An implementation of the Grammar of Graphics in R
gganimate - A Grammar of Animated Graphics
ermineR - R wrapper for ermineJ
Synima - Synteny Imager
patchwork - The Composer of ggplots
redotable - A dotplot application for DNA/RNA sequence
DnaFeaturesViewer - :eye: Python library to plot DNA sequence features (e.g. from Genbank files)
calendR - Ready to print calendars with ggplot2