galaxy
genenetwork2
galaxy | genenetwork2 | |
---|---|---|
4 | 3 | |
1,315 | 33 | |
1.4% | - | |
10.0 | 0.0 | |
2 days ago | 3 days ago | |
Python | Python | |
GNU General Public License v3.0 or later | GNU Affero General Public License v3.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
galaxy
-
Need for GUIs for bioinformatic tools?
Maybe it would help you to look at the galaxy project: GitHub main site
- BIOINFORMATICS PROJECT
- Any bioinfo open source projects looking for contributors?
- Developed a new kind of dual extruder system on fully custom built 3D printer
genenetwork2
-
Projects to fill GitHub over the summer
This depends on your own interest... I could plug some projects I work on (e.g. geneNetwork2 (https://github.com/genenetwork/genenetwork2 )) but if you're not interested in genetics or don't code in Python this is ofcourse not the right project for you...
- Any bioinfo open source projects looking for contributors?
-
Where should I focus in order to be able to do a side project independently?
e.g. if you're interested in biology / bioinformatics, I can suggest looking at https://github.com/Genenetwork/Genenetwork2 which is the python back-end for http://www.genenetwork.org/ a database / analysis system used in mouse genetics research.
What are some alternatives?
nextflow - A DSL for data-driven computational pipelines
awesome-physics - 🌌 A collaborative list of awesome software for exploring Physics concepts
Biopython - Official git repository for Biopython (originally converted from CVS)
GODWIN - Testing Godwin's Law using Reddit comments
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
galaxy_ng - Ansible Galaxy Server - Issues on https://forum.ansible.com Docs on https://galaxy-ng.readthedocs.io/
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
orfipy - Fast and flexible ORF finder
ansible-proxmox - Ansible for provisioning proxmox servers
goatools - Python library to handle Gene Ontology (GO) terms