Projects to fill GitHub over the summer

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

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  • genenetwork2

    GeneNetwork (2nd generation)

  • This depends on your own interest... I could plug some projects I work on (e.g. geneNetwork2 (https://github.com/genenetwork/genenetwork2 )) but if you're not interested in genetics or don't code in Python this is ofcourse not the right project for you...

  • public-apis

    A collective list of free APIs

  • Hot take: you don't necessarily need to do your side projects in bioinformatics strictly. There are tons of public APIs you can use to scrape data from. Obtain data and create your own dataviz projects, even for things that aren't traditionally in the bioinfo realm. A lot of the skills you learn will be applicable to biological data, even if "true" bioinfo pipelines involve some domain-specific tools like bioconductor/biopython

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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  • GODWIN

    Testing Godwin's Law using Reddit comments

  • Outside of biology, some of these visualization/ML skills can be useful to have on your portfolio. For instance, I once had a project where I scraped Reddit comments to test Godwin's Law and used that to teach myself the basic statistical approaches to K-M survival analysis (shameless plug), which is pretty nifty if your lab ever has to correlate sequencing results against human/mouse survival data.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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