fideslang
GTDBTk
fideslang | GTDBTk | |
---|---|---|
2 | 1 | |
1 | 433 | |
- | 4.4% | |
7.2 | 7.5 | |
14 days ago | 13 days ago | |
Python | Python | |
Creative Commons Attribution 4.0 | GNU General Public License v3.0 only |
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fideslang
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What data governance tool are you folks using?
I’ve also been impressed with the approach of Fides, an open source privacy management framework that ties into ci/cd, though I haven’t used it myself yet. The thing about it that stood out was Fideslang, their language and taxonomy for representing data privacy primitives.
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Devtools for Data Privacy — Step 1: Privacy Taxonomy V1.0
NOTE: If you’d like to jump straight to the Github repo or documentation you can get these at:
GTDBTk
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Bacteria taxonomy determination!URGENT!
I would try GTDB-Tk, mOTUs2, or CAT/BAT
What are some alternatives?
fides - The Privacy Engineering & Compliance Framework
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite
dada2 - Accurate sample inference from amplicon data with single nucleotide resolution
classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy
bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
pyani - Application and Python module for average nucleotide identity analyses of microbes.
phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes