drugfindR VS bambu

Compare drugfindR vs bambu and see what are their differences.

drugfindR

Repository holding the code for the drugfindR R package (by CogDisResLab)
R ilincs Transcriptomics Bioinformatics bioinformatics-pipeline
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bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data (by GoekeLab)
bambu transcript-reconstruction transcript-quantification long-reads nanopore-sequencing Transcriptomics rna-seq-analysis bioconductor R nanopore rna-seq
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drugfindR bambu
1 1
7 163
- 1.2%
9.4 5.7
4 days ago 13 days ago
R R
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

drugfindR

Posts with mentions or reviews of drugfindR. We have used some of these posts to build our list of alternatives and similar projects.

bambu

Posts with mentions or reviews of bambu. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing drugfindR and bambu you can also consider the following projects:

Baltica - Baltica: integrated differential junction usage

rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

cosmosR - COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

TCGAbiolinks - TCGAbiolinks

biomisc_R - command line bioinformatic scripts written in R

rnaseq - RNA-seq analyses.

maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

drugfindR vs Baltica bambu vs rna-seq-kallisto-sleuth drugfindR vs cosmosR bambu vs TCGAbiolinks drugfindR vs biomisc_R bambu vs rnaseq drugfindR vs maftools bambu vs rBLAST bambu vs clustifyr bambu vs cosmosR