deepvariant
ariba
| deepvariant | ariba | |
|---|---|---|
| 5 | 1 | |
| 3,080 | 154 | |
| 1.0% | 1.9% | |
| 9.1 | 3.0 | |
| about 2 months ago | 7 months ago | |
| Python | Python | |
| BSD 3-clause "New" or "Revised" License | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
deepvariant
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
ariba
What are some alternatives?
galaxy - Data intensive science for everyone.
abricate - :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
masurca
scanpy - Single-cell analysis in Python. Scales to >1M cells.
MGEfinder - A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
abritamr - A pipeline for running AMRfinderPlus and collating results into functional classes
Biopython - Official git repository for Biopython (originally converted from CVS)
edgecase - A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
16SMaRT - 16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).