bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids (by oschwengers)
dfast_core
DDBJ Fast Annotation and Submission Tool (by nigyta)
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| bakta | dfast_core | |
|---|---|---|
| 1 | 2 | |
| 389 | 71 | |
| - | - | |
| 8.5 | 5.0 | |
| about 2 months ago | 3 months ago | |
| Python | Python | |
| GNU General Public License v3.0 only | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bakta
Posts with mentions or reviews of bakta.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-11.
-
orfs in DNA
If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).
dfast_core
Posts with mentions or reviews of dfast_core.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-11.
-
orfs in DNA
If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).
-
Is there any other tool for COG annotation of the bacterial genome than EggNOG mapper?
reCOGnizer (https://github.com/iquasere/reCOGnizer) can annotate with COGs, and the other databases available at CDD. It obtains all information concerning COGs description and categories, and outputs krona plots and TSV tables in formats easy to analyze. There is also mantis (https://github.com/PedroMTQ/mantis), prokka (https://github.com/tseemann/prokka) and DFAST (https://github.com/nigyta/dfast_core), the latter two work on contigs and the first two are for proteins
What are some alternatives?
When comparing bakta and dfast_core you can also consider the following projects:
prokka - :zap: :aquarius: Rapid prokaryotic genome annotation
FastANI - Fast Whole-Genome Similarity (ANI) Estimation
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
QUEEN - QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources