Dfast_core Alternatives

Similar projects and alternatives to dfast_core

reCOGnizer

9 24 7.4 HTML dfast_core VS reCOGnizer

A tool for domain based annotation with databases from the Conserved Domains Database
prokka

5 754 0.0 Perl dfast_core VS prokka

:zap: :aquarius: Rapid prokaryotic genome annotation
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
mantis

6 51 3.1 Python dfast_core VS mantis

A package to annotate protein sequences (by PedroMTQ)
bakta

1 389 8.5 Python dfast_core VS bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better dfast_core alternative or higher similarity.

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dfast_core reviews and mentions

Posts with mentions or reviews of dfast_core. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-11.

orfs in DNA
3 projects | /r/bioinformatics | 11 Oct 2022

If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).
Is there any other tool for COG annotation of the bacterial genome than EggNOG mapper?
5 projects | /r/bioinformatics | 15 Nov 2021

reCOGnizer (https://github.com/iquasere/reCOGnizer) can annotate with COGs, and the other databases available at CDD. It obtains all information concerning COGs description and categories, and outputs krona plots and TSV tables in formats easy to analyze. There is also mantis (https://github.com/PedroMTQ/mantis), prokka (https://github.com/tseemann/prokka) and DFAST (https://github.com/nigyta/dfast_core), the latter two work on contigs and the first two are for proteins