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Mantis Alternatives
Similar projects and alternatives to mantis
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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COG
Scripts and steps for making a consolidated COG database file for tools like DIAMOND. (by transcript)
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better mantis alternative or higher similarity.
mantis reviews and mentions
Posts with mentions or reviews of mantis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-11-15.
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database for protein biological function association
You could use https://github.com/PedroMTQ/mantis
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How to get consensus annotations for a de novo orthogroup/ortholog analysis?
https://github.com/PedroMTQ/mantis Mantis works on protein level but it does address the consensus matter you mentioned
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Is there any other tool for COG annotation of the bacterial genome than EggNOG mapper?
Hello, I'm the developer of Mantis (https://github.com/PedroMTQ/mantis). Mantis doesn't use a database for COGs specifically but it does output some of the IDs you mentioned (e.g., KOs, COGs). If this is important for your work I could consider creating a COG centric database (or at least format it to be natively compatible with Mantis). Anyhow, please check the GitHub page and message me or post an issue and I'll try to help out.
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Functional annotation of prokaryotic genomes
Thanks a lot! Will definitely try it out. Another question: Does Mantis+eggNOG annotate the genes with eggNOG-ortholog-ids? More generally, what are the resulting annotation types? (pfam, GO, KO, EC and description are listed, how about KR, BiGG, brite and cazy?)
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How can I map KEGG gene categories onto aligned genomes?
You could accomplish this by gene calling with prodigal and then annotating with a tools like Mantis https://github.com/PedroMTQ/mantis
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A note from our sponsor - WorkOS
workos.com | 19 Apr 2024
Stats
Basic mantis repo stats
6
51
3.1
4 months ago
PedroMTQ/mantis is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of mantis is Python.
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