ariba
deepvariant
ariba | deepvariant | |
---|---|---|
1 | 5 | |
154 | 3,085 | |
1.9% | 1.2% | |
3.0 | 9.1 | |
7 months ago | about 2 months ago | |
Python | Python | |
GNU General Public License v3.0 or later | BSD 3-clause "New" or "Revised" License |
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ariba
deepvariant
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
abricate - :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
galaxy - Data intensive science for everyone.
masurca
MGEfinder - A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
scanpy - Single-cell analysis in Python. Scales to >1M cells.
abritamr - A pipeline for running AMRfinderPlus and collating results into functional classes
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
edgecase - A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Biopython - Official git repository for Biopython (originally converted from CVS)
16SMaRT - 16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.