Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid. (by steineggerlab)
dada2
Accurate sample inference from amplicon data with single nucleotide resolution (by benjjneb)
Metabuli | dada2 | |
---|---|---|
1 | 1 | |
62 | 453 | |
- | - | |
9.0 | 4.3 | |
29 days ago | 4 months ago | |
C++ | R | |
GNU General Public License v3.0 only | GNU Lesser General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Metabuli
Posts with mentions or reviews of Metabuli.
We have used some of these posts to build our list of alternatives
and similar projects.
dada2
Posts with mentions or reviews of dada2.
We have used some of these posts to build our list of alternatives
and similar projects.
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Error model generation and subsequent steps in DADA2 pipeline for multiple sequencing runs
It is recommended to process each run separately (https://github.com/benjjneb/dada2/issues/1177). Each flow cell behaves differently, so the error model for one might not work well for another run. You can merge them together once you have your sequence table.
What are some alternatives?
When comparing Metabuli and dada2 you can also consider the following projects:
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
TCGAbiolinks - TCGAbiolinks
rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
MicrobiomeStat - Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite