DnaChisel
deepvariant
| DnaChisel | deepvariant | |
|---|---|---|
| 2 | 5 | |
| 209 | 3,080 | |
| 1.9% | 0.9% | |
| 5.6 | 9.1 | |
| 11 months ago | about 2 months ago | |
| Python | Python | |
| MIT License | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
DnaChisel
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Medical professionals, what is the stupidest misconception a patient has had about the human body?
There exists an algoritm and its implementation called DNA Chisel which can optimize viruses or bacteria computationally and it was used for example to replicate the BioNTech vaccine.
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Reverse Engineering Source Code of the Biontech Pfizer Vaccine: Part 2
How interesting. Was going through the top algorithm and it uses this library. Blows my mind that we have open source libraries to optimise dna sequences. Fascinating stuff.
deepvariant
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
biomisc - collection of miscellaneous command line bioinformatic scripts
galaxy - Data intensive science for everyone.
scanpy - Single-cell analysis in Python. Scales to >1M cells.
masurca
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Biopython - Official git repository for Biopython (originally converted from CVS)
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
slivar - genetic variant expressions, annotation, and filtering for great good.
nni - An open source AutoML toolkit for automate machine learning lifecycle, including feature engineering, neural architecture search, model compression and hyper-parameter tuning.
bioinformatics - Bioinformatic algorithms for the UCLA Bioinformatics Specialization
ariba - Antimicrobial Resistance Identification By Assembly