deepvariant VS slivar

Compare deepvariant vs slivar and see what are their differences.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
Tensorflow deep-neural-network Genomics Science Dna sequencing Genome Bioinformatics Deep Learning ngs deepvariant Machine Learning
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slivar

genetic variant expressions, annotation, and filtering for great good. (by brentp)
Genomics variant-analysis variant-interpretation rare-disease rare-variant-analysis
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deepvariant slivar
5 1
3,076 240
1.5% -
9.1 5.7
about 1 month ago 5 months ago
Python Nim
BSD 3-clause "New" or "Revised" License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

deepvariant

Posts with mentions or reviews of deepvariant. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-05-06.

slivar

Posts with mentions or reviews of slivar. We have used some of these posts to build our list of alternatives and similar projects.
  • Help on installation of GEMINi
    1 project | /r/bioinformatics | 4 Jun 2023
    Looks like they’ve broken the install at some point. If you check the GitHub for Gemini it recommends you replace it with slivar https://github.com/brentp/slivar

What are some alternatives?

When comparing deepvariant and slivar you can also consider the following projects:

galaxy - Data intensive science for everyone.

minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences

masurca

bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

scanpy - Single-cell analysis in Python. Scales to >1M cells.

rare-disease-wf - (WIP) best-practices workflow for rare disease

transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

open-cravat - A modular annotation tool for genomic variants

Biopython - Official git repository for Biopython (originally converted from CVS)

af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

codeql - GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.

deepvariant vs galaxy slivar vs minimap2 deepvariant vs masurca slivar vs bwa deepvariant vs scanpy slivar vs rare-disease-wf deepvariant vs transformers slivar vs open-cravat deepvariant vs Biopython slivar vs Biopython deepvariant vs af2complex slivar vs codeql