slivar
genetic variant expressions, annotation, and filtering for great good. (by brentp)
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) (by lh3)
| slivar | bwa | |
|---|---|---|
| 1 | 3 | |
| 241 | 1,454 | |
| - | - | |
| 5.7 | 2.7 | |
| 5 months ago | 26 days ago | |
| Nim | C | |
| MIT License | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
slivar
Posts with mentions or reviews of slivar.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Help on installation of GEMINi
Looks like they’ve broken the install at some point. If you check the GitHub for Gemini it recommends you replace it with slivar https://github.com/brentp/slivar
bwa
Posts with mentions or reviews of bwa.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-25.
-
my friend showed me his code, thees are all functions
Check out these sweet macros (from the same repo): https://github.com/lh3/bwa/blob/139f68fc4c3747813783a488aef2adc86626b01b/kbtree.h
- Scientists Are Finding Fungi in Cancerous Tumors
- Burrows–Wheeler Transform
What are some alternatives?
When comparing slivar and bwa you can also consider the following projects:
minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences
foldseek - Foldseek enables fast and sensitive comparisons of large structure sets.
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
rare-disease-wf - (WIP) best-practices workflow for rare disease
sra-tools - SRA Tools
open-cravat - A modular annotation tool for genomic variants
bowtie - An ultrafast memory-efficient short read aligner