Scientists Are Finding Fungi in Cancerous Tumors

• biostar-central

  10 573 2.5 Python

  Biostar Q&A

• sra-tools

  8 1,049 9.2 C

  SRA Tools

  

Start with downloading SRA toolkit: https://github.com/ncbi/sra-tools/wiki/02.-Installing-SRA-To...

Find some data of interest: https://www.ncbi.nlm.nih.gov/sra?term=(%22Homo%20sapiens%22[... (This searches SRA for human genome sequences on illumina with fastq files available)

Run fasterq-dump on the SRR (listed as "Runs" in the SRA page of your choice):

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• bwa

  3 1,453 2.7 C

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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