C Genomics

Open-source C projects categorized as Genomics
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Topics: Bioinformatics bam Samtools sequence-alignment WebAssembly
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Top 5 C Genomic Projects

  • minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    • Project mention: Ask HN: Comment here about whatever you're passionate about at the moment | news.ycombinator.com | 2023-11-06

    Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.

  • bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    • Project mention: my friend showed me his code, thees are all functions | /r/ProgrammerHumor | 2023-05-25

    Check out these sweet macros (from the same repo): https://github.com/lh3/bwa/blob/139f68fc4c3747813783a488aef2adc86626b01b/kbtree.h

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

    WorkOS logo

  • biowasm

    WebAssembly modules for genomics

    • Project mention: Biowasm – Run C/C++ genomics tools in the browser | news.ycombinator.com | 2024-03-11

  • genozip

    A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

  • bam-filter

    Use simple expressions to filter a BAM/CRAM file

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    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C Genomics related posts

Index

What are some of the best open-source Genomic projects in C? This list will help you:

Project Stars
1 minimap2 1,684
2 bwa 1,443
3 biowasm 186
4 genozip 148
5 bam-filter 5

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