C sequence-alignment

Open-source C projects categorized as sequence-alignment

Top 3 C sequence-alignment Projects

  • minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

  • Project mention: Ask HN: Comment here about whatever you're passionate about at the moment | news.ycombinator.com | 2023-11-06

    Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.

  • bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  • Project mention: my friend showed me his code, thees are all functions | /r/ProgrammerHumor | 2023-05-25

    Check out these sweet macros (from the same repo): https://github.com/lh3/bwa/blob/139f68fc4c3747813783a488aef2adc86626b01b/kbtree.h

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

    WorkOS logo
  • miniprot

    Align proteins to genomes with splicing and frameshift

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-11-06.

C sequence-alignment related posts


What are some of the best open-source sequence-alignment projects in C? This list will help you:

Project Stars
1 minimap2 1,679
2 bwa 1,443
3 miniprot 293

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