C sequence-alignment

Open-source C projects categorized as sequence-alignment
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Bioinformatics Genomics fm-index spliced-alignment
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Top 3 C sequence-alignment Projects

sequence-alignment

  1. minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

  2. InfluxDB

    InfluxDB – Built for High-Performance Time Series Workloads. InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.

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  3. bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  4. miniprot

    Align proteins to genomes with splicing and frameshift

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C sequence-alignment discussion

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C sequence-alignment related posts

  • BLAST 10,000 genes?

    1 project | /r/bioinformatics | 25 Feb 2023

  • Truncating genome fastas to just overlapping regions

    1 project | /r/bioinformatics | 19 Jan 2023

  • Alignment of long reads to plasmid and generation of consensus sequence.

    1 project | /r/bioinformatics | 26 Oct 2022

  • Scientists Are Finding Fungi in Cancerous Tumors

    3 projects | news.ycombinator.com | 10 Oct 2022

Index

What are some of the best open-source sequence-alignment projects in C? This list will help you:

# Project Stars
1 minimap2 1,950
2 bwa 1,603
3 miniprot 360

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