miniprot

Align proteins to genomes with splicing and frameshift (by lh3)
Add to my DEV experience Bioinformatics sequence-alignment
Source Code
lh3.github.io
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Miniprot Alternatives

Similar projects and alternatives to miniprot based on common topics and language

  • Liftoff

    2 miniprot VS Liftoff

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  • seqtk

    8 miniprot VS seqtk

    Toolkit for processing sequences in FASTA/Q formats

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  • minimap2

    5 miniprot VS minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

  • bwa

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  • MMseqs2

    4 miniprot VS MMseqs2

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better miniprot alternative or higher similarity.
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miniprot reviews and mentions

Posts with mentions or reviews of miniprot. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-02-06.
  • Identifying potential genes involved in nociception
    2 projects | /r/bioinformatics | 6 Feb 2023
    Alternatively, there is a new tool out from Heng Li (bioinformatics godfather) which apparently does good quality mapping of proteins to references (miniprot). You could download your 'painless' genes from Drosophila and use this tool to look for them in your reference (similar to above, except this tool is apparently better able to handle larger differences).

Stats

Basic miniprot repo stats
1
299
5.8
21 days ago

lh3/miniprot is an open source project licensed under MIT License which is an OSI approved license.

The primary programming language of miniprot is C.

Popular Comparisons

  1. miniprot VS seqtk
  2. miniprot VS Liftoff
  3. miniprot VS minimap2

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