DnaChisel
scanpy
DnaChisel | scanpy | |
---|---|---|
2 | 5 | |
209 | 1,763 | |
1.9% | 2.0% | |
5.6 | 9.3 | |
11 months ago | 5 days ago | |
Python | Python | |
MIT License | BSD 3-clause "New" or "Revised" License |
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DnaChisel
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Medical professionals, what is the stupidest misconception a patient has had about the human body?
There exists an algoritm and its implementation called DNA Chisel which can optimize viruses or bacteria computationally and it was used for example to replicate the BioNTech vaccine.
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Reverse Engineering Source Code of the Biontech Pfizer Vaccine: Part 2
How interesting. Was going through the top algorithm and it uses this library. Blows my mind that we have open source libraries to optimise dna sequences. Fascinating stuff.
scanpy
- Renaming Genes for Scanpy Plot
- Useful Python Decorators for Data Scientists
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[Scanpy] Installation issues related to pytables
Upon searching stack, I still do not understand the exact issue, as the file "hdf5extension.cp38-win_amd64" is present within C:\Users\username\anaconda3\lib\site-packages\tables\. Would anyone be able to explain the problem and any potential circumventions?
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standardize/normalize seq data
I would suggest you explore with SCANPY and verify if your batch labels generate a strong separation in your samples (PCA, tSNE, UMAP). If you then need to correct for batches, according to how simple/complex they are, you can choose a tool from this benchmark.
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Flipping one histogram below the axis.
I am plotting 2 1-D histograms on top of one another using a hold on command. Is there a way to have one histogram be upside down, and then to flip the entire plot 90˚? I am looking to create a violin plot https://github.com/theislab/scanpy/issues/1448 on my own, having one histogram on the left, and one on the right.
What are some alternatives?
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