scanpy
dash
scanpy | dash | |
---|---|---|
5 | 56 | |
1,757 | 20,502 | |
1.7% | 0.7% | |
9.3 | 9.6 | |
6 days ago | 5 days ago | |
Python | Python | |
BSD 3-clause "New" or "Revised" License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
scanpy
- Renaming Genes for Scanpy Plot
- Useful Python Decorators for Data Scientists
-
[Scanpy] Installation issues related to pytables
Upon searching stack, I still do not understand the exact issue, as the file "hdf5extension.cp38-win_amd64" is present within C:\Users\username\anaconda3\lib\site-packages\tables\. Would anyone be able to explain the problem and any potential circumventions?
-
standardize/normalize seq data
I would suggest you explore with SCANPY and verify if your batch labels generate a strong separation in your samples (PCA, tSNE, UMAP). If you then need to correct for batches, according to how simple/complex they are, you can choose a tool from this benchmark.
-
Flipping one histogram below the axis.
I am plotting 2 1-D histograms on top of one another using a hold on command. Is there a way to have one histogram be upside down, and then to flip the entire plot 90˚? I am looking to create a violin plot https://github.com/theislab/scanpy/issues/1448 on my own, having one histogram on the left, and one on the right.
dash
-
dash VS solara - a user suggested alternative
2 projects | 13 Oct 2023
-
[Python] NiceGUI: Lassen Sie jeden Browser das Frontend für Ihren Python-Code sein
Of course there are valid use cases for splitting frontend and backend technologies. NiceGUI is for those who don’t want to leave the Python ecosystem and like to reap the benefits of having all code in one place. There are other options like Streamlit, Dash, Anvil, JustPy, and Pynecone. But we initially created NiceGUI to easily handle the state of external hardware like LEDs, motors, and cameras. Additionally, we wanted to offer a gentle learning curve while still providing the ability to go all the way down to HTML, CSS, and JavaScript if needed.
- Visualizing parquet in s3 bucket for data analysis?
-
Little guidance of a python newbie
You could use something like Streamlit or Dash. In any case you will be accessing your app through the browser.
-
Launch HN: Pynecone (YC W23) – Web Apps in Pure Python
Useful list. Dash & bokeh as two more in the space
https://github.com/plotly/dash
-
Python projects with best practices on Github?
I also heard of Dash which serves the same purpose I guess, but I think it has more to offer.
-
4 Streamlit Alternatives for Building Python Data Apps
Plotly is a plotting library, and Dash is their open-source framework for building data apps with Python, R or Julia. (Dash also has an Enterprise version, but we'll focus on the open-source library here.)
-
NiceGUI: Let any browser be the frontend for your Python code
Of course there are valid use cases for splitting frontend and backend technologies. NiceGUI is for those who don’t want to leave the Python ecosystem and like to reap the benefits of having all code in one place. There are other options like Streamlit, Dash, Anvil, JustPy, and Pynecone. But we initially created NiceGUI to easily handle the state of external hardware like LEDs, motors, and cameras. Additionally, we wanted to offer a gentle learning curve while still providing the ability to go all the way down to HTML, CSS, and JavaScript if needed.
-
Sharing interactive Plotly graphs
looks like you can get it manually (albeit with a loss of interactivity) https://github.com/plotly/dash/issues/145
-
Containerizing Shiny for Python and Shinylive Applications
Shiny is a framework that makes it easy to build interactive web applications. Shiny was introduced 10 years ago as an R package. In his 10th anniversary keynote speech, Joe Cheng announced Shiny for Python at the 2022 RStudio Conference. Python programmers can now try out Shiny to create interactive data-driven web applications. Shiny comes as an alternative to other frameworks, like Dash, or Streamlit.
What are some alternatives?
scikit-learn - scikit-learn: machine learning in Python
streamlit - Streamlit — A faster way to build and share data apps.
data-science-ipython-notebooks - Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
fastapi - FastAPI framework, high performance, easy to learn, fast to code, ready for production
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
panel - Panel: The powerful data exploration & web app framework for Python
dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js
uvicorn - An ASGI web server, for Python. 🦄
pagoda2 - R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
Flask - The Python micro framework for building web applications.
getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science
nicegui - Create web-based user interfaces with Python. The nice way.