deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
bioinformatics
Bioinformatic algorithms for the UCLA Bioinformatics Specialization (by ashinzekene)
| deepvariant | bioinformatics | |
|---|---|---|
| 5 | 1 | |
| 3,080 | 3 | |
| 1.0% | - | |
| 9.1 | 6.5 | |
| about 2 months ago | 7 months ago | |
| Python | Python | |
| BSD 3-clause "New" or "Revised" License | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
deepvariant
Posts with mentions or reviews of deepvariant.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-06.
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
-
Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
-
[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
bioinformatics
Posts with mentions or reviews of bioinformatics.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Coding
https://github.com/ashinzekene/bioinformatics This requires more coding skills but goes over some common algorithms in bioinformatics
What are some alternatives?
When comparing deepvariant and bioinformatics you can also consider the following projects:
galaxy - Data intensive science for everyone.
masurca
OSGenome - An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
scanpy - Single-cell analysis in Python. Scales to >1M cells.
Genome - Genome Network Ala Neural Network
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
NanoSim - Nanopore sequence read simulator
Biopython - Official git repository for Biopython (originally converted from CVS)
dash - Data Apps & Dashboards for Python. No JavaScript Required.
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
deepvariant vs galaxy
bioinformatics vs masurca
deepvariant vs masurca
bioinformatics vs OSGenome
deepvariant vs scanpy
bioinformatics vs Genome
deepvariant vs transformers
bioinformatics vs NanoSim
deepvariant vs Biopython
bioinformatics vs dash
deepvariant vs af2complex
bioinformatics vs Biopython