Top 7 genomics-visualization Open-Source Projects

• pyCirclize

  6 610 8.6 Python

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

• gggenomes

  3 551 8.6 R

  A grammar of graphics for comparative genomics

• InfluxDB

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• pyGenomeViz

  3 227 8.3 Python

  A genome visualization python package for comparative genomics

• kent

  12 206 9.9 C

  UCSC Genome Browser source tree. Stable branch: "beta".

  

• ezancestry

  1 55 7.7 Jupyter Notebook

  Easy genetic ancestry predictions in Python

• edgecase

  1 14 2.1 Python

  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

• tinycov

  1 13 1.5 Python

  Command line tool to plot genomic coverage from a BAM file

Project mention: Bam viewer with custom fasta reference that's embeddable in Streamlit app? | /r/bioinformatics | 2023-06-30

tinycov I keep finding these small tools built with python, but with no API available, so they require a combination of CLI and Docker to work

• SaaSHub

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genomics-visualization related posts

• reddit tools, interesting links, many other things (

  3 projects | /r/01lyrics | 6 Apr 2023

• How would I respond to this evolution-denier?

  1 project | /r/DebateEvolution | 4 Jan 2023

• Software to make in-scale illustrations of genomic locations

  3 projects | /r/bioinformatics | 10 Sep 2022

• pyGenomeViz: A genome visualization python package for comparative genomics

  3 projects | /r/bioinformatics | 2 Aug 2022

• Regarding 200000+ ERVs that are shared between humans and chimps

  2 projects | /r/DebateEvolution | 5 Aug 2022

• Finding specific binding motifs

  1 project | /r/bioinformatics | 23 Jun 2022

• Any recommendations for a place to host my Dante data ?

  1 project | /r/DanteLabs | 18 Mar 2022
• A note from our sponsor - InfluxDB
  www.influxdata.com | 4 May 2024

  Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

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