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Python gut-microbiome Projects
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metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
Project mention: Metagenomic samples analysis: From taxonomic classification to reads mapping | /r/bioinformatics | 2023-06-09Maybe this workflow will be interesting to you: it assembles metagenomes, generates bins, and also creates metabolic models for predicting interactions within microbiomes 💎 https://github.com/franciscozorrilla/metaGEM
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
Python gut-microbiome related posts
- Metagenomic samples analysis: From taxonomic classification to reads mapping
- Is Developing a Multi-omics Pipeline Feasable for a Masters Thesis?
- MetaQuast for assembling samples from complex communities
- Finding BGCs from antiSMASH database in metagenomes
- Need guidance/plan/roadmap to transition from bioinformatics to systems biology and netwrok biology.
- Looking for Voluntary/Part-time Bioinformatics projects/work!!
- metaGEM: metagenomes -> genomes -> metabolic models
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A note from our sponsor - SaaSHub
www.saashub.com | 30 Apr 2024
Index
Project | Stars | |
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1 | metaGEM | 165 |
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