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Python metabolic-model Projects
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metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
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CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
Project mention: Metagenomic samples analysis: From taxonomic classification to reads mapping | /r/bioinformatics | 2023-06-09Maybe this workflow will be interesting to you: it assembles metagenomes, generates bins, and also creates metabolic models for predicting interactions within microbiomes 💎 https://github.com/franciscozorrilla/metaGEM
Python metabolic-models related posts
- Metagenomic samples analysis: From taxonomic classification to reads mapping
- Is Developing a Multi-omics Pipeline Feasable for a Masters Thesis?
- Favorite Pipeline/Methods Figure
- MetaQuast for assembling samples from complex communities
- Finding BGCs from antiSMASH database in metagenomes
- Need guidance/plan/roadmap to transition from bioinformatics to systems biology and netwrok biology.
- Looking for Voluntary/Part-time Bioinformatics projects/work!!
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