Favorite Pipeline/Methods Figure

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
metagenomics Graphviz computational-biology Tool metabolic-models

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  • pharokka

    fast phage annotation program

    • Self plug but here is mine (though I didn’t make it myself!) https://github.com/gbouras13/pharokka

  • metaGEM

    :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

    • shameless self plug https://github.com/franciscozorrilla/metaGEM it helps to get feedback from your colleagues, especially the more design-minded ones. here's what mine looked like before feedback https://github.com/franciscozorrilla/metaGEM/wiki

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • GraphvizOnline

    Let's Graphviz it online

    • https://dreampuf.github.io/GraphvizOnline/ for making a basic figure.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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