sarek VS CancerDB

Compare sarek vs CancerDB and see what are their differences.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing (by nf-core)
nextflow Workflow Pipeline Bioinformatics Genomics cancer next-generation-sequencing Conda reproducible-research Containers germline somatic variant-calling nf-core gatk4 Annotation whole-genome-sequencing whole-exome-sequencing pre-processing target-panels
Source Code
nf-co.re
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CancerDB

CancerDB: a computable encyclopedia about cancer. (by breck7)
cancer Data knowledge-graph
Source Code
cancerdb.com
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sarek CancerDB
5 12
333 23
4.2% -
9.8 5.8
3 days ago 2 months ago
Nextflow JavaScript
MIT License -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

sarek

Posts with mentions or reviews of sarek. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

CancerDB

Posts with mentions or reviews of CancerDB. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-15.

What are some alternatives?

When comparing sarek and CancerDB you can also consider the following projects:

GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

breckyunits.com - Breck Yunits' Blog

galaxy - Data intensive science for everyone.

scroll - Tools for thought. An extensible alternative to Markdown.

rnaseq-nf - A proof of concept of RNAseq pipeline

pldb - PLDB: a Programming Language Database. A computable encyclopedia about programming languages.

mag - Assembly and binning of metagenomes

MusicOfAPeople.com - Music for the people by the people. #BuildPublicDomain

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

30000hours - How many hours have you spent practicing programming?

configs - Config files used to define parameters specific to compute environments at different Institutions

patterns - A curated collection of Nextflow implementation patterns

sarek vs GATK CancerDB vs breckyunits.com sarek vs galaxy CancerDB vs scroll sarek vs rnaseq-nf CancerDB vs pldb sarek vs mag CancerDB vs MusicOfAPeople.com sarek vs rnatoy CancerDB vs 30000hours sarek vs configs sarek vs patterns