sarek
CancerDB
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sarek
- Recommendations for software or online resources
- Best somatic variant callers?
-
GATK4 automated pipelines in existence?
The sarek pipeline from nf-core might interest you
- Workflow Question
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aws batch keeps the "Desired vCPUs" high long after they should be reduced
The issue is specific to https://github.com/nf-core/sarek and/or it's usage of https://www.nextflow.io/
CancerDB
- [OC] Cancer in the United States: Heatmap Visualizations
- There is a worrying amount of fraud in medical research
- Ask HN: How do I find my “purpose”?
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30k Hours (2019)
Far more interesting is a project just getting started: CancerDB [1]
[1] https://github.com/breck7/CancerDB
- CancerDB.com now has search
- Show HN: Cancerdb.com Search
-
A Hacknernews thinks javascript can help cure cancer
CancerDB: A public domain csv file to help build the next great cure
- CancerDB
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Is WSB ready for this? This is not a joke...I have only done this once before. LETS GO!!! #YOLO
PRODUCT #2: https://github.com/breck7/CancerDB
- CancerDB: A public domain csv file to help build a cure
What are some alternatives?
GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
breckyunits.com - Breck Yunits' Blog
galaxy - Data intensive science for everyone.
scroll - Tools for thought. An extensible alternative to Markdown.
rnaseq-nf - A proof of concept of RNAseq pipeline
pldb - PLDB: a Programming Language Database. A computable encyclopedia about programming languages.
mag - Assembly and binning of metagenomes
MusicOfAPeople.com - Music for the people by the people. #BuildPublicDomain
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
30000hours - How many hours have you spent practicing programming?
configs - Config files used to define parameters specific to compute environments at different Institutions
patterns - A curated collection of Nextflow implementation patterns