rna-seq-kallisto-sleuth
bambu
| rna-seq-kallisto-sleuth | bambu | |
|---|---|---|
| 1 | 1 | |
| 63 | 163 | |
| - | 1.2% | |
| 5.9 | 5.7 | |
| 19 days ago | 11 days ago | |
| Python | R | |
| MIT License | GNU General Public License v3.0 only |
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rna-seq-kallisto-sleuth
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qiime2 but for RNAseq data?
(repo is here: https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth)
bambu
What are some alternatives?
clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
drugfindR - Repository holding the code for the drugfindR R package
drake - An R-focused pipeline toolkit for reproducibility and high-performance computing
TCGAbiolinks - TCGAbiolinks
biomisc_R - command line bioinformatic scripts written in R
rnaseq - RNA-seq analyses.
reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
targets - Function-oriented Make-like declarative workflows for R
wiggleplotr - A small R package to make sequencing read coverage plots in R.
cosmosR - COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.