rna-seq-kallisto-sleuth
drake
rna-seq-kallisto-sleuth | drake | |
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1 | 1 | |
63 | 1,329 | |
- | 0.0% | |
5.9 | 6.1 | |
20 days ago | 2 months ago | |
Python | R | |
MIT License | GNU General Public License v3.0 only |
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rna-seq-kallisto-sleuth
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qiime2 but for RNAseq data?
(repo is here: https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth)
drake
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Your impression of {targets}? (r package)
The targets package is the official successor to Drake, and has the same primary author (Will Landau). He has explained why he created targets, which includes stronger guardrails for users and better UX.
What are some alternatives?
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
targets - Function-oriented Make-like declarative workflows for R
clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
easystats - :milky_way: The R easystats-project
biomisc_R - command line bioinformatic scripts written in R
tabulapdf - Bindings for Tabula PDF Table Extractor Library
reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
ncaahoopR - An R package for working with NCAA Basketball Play-by-Play Data
fiery - A flexible and lightweight web server
wiggleplotr - A small R package to make sequencing read coverage plots in R.
causalglm - Interpretable and model-robust causal inference for heterogeneous treatment effects using generalized linear working models with targeted machine-learning