pyCircos
phylophlan
| pyCircos | phylophlan | |
|---|---|---|
| 5 | 1 | |
| 309 | 114 | |
| - | 2.6% | |
| 3.0 | 6.7 | |
| about 1 month ago | about 1 month ago | |
| Python | Python | |
| GNU General Public License v3.0 only | MIT License |
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pyCircos
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Python packages to prepare publication-quality figures.
pyCircos: https://github.com/ponnhide/pyCircos
- Show HN: Beautiful Circos Plots in Matplotlib
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pyCircos: Beautiful circos plots in matplotlib
Thank you for everyone's comments. I'm glad for getting positive responses from this community. This library provides the way not only for drawing circos plots and for visualizing circular phylogenetic trees. https://github.com/ponnhide/pyCircos/blob/master/img/tree-example.png This function is still in progress; however, I hope it helps your biological science.
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Beautiful circos plots in Python
Here, I made pyCircos that allow drawing circos plots with matplotlib. By using this package, not only circos plots but also complex polar plots can be quickly drawn.
phylophlan
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PhyloPhlAN Tutorial?
I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.
What are some alternatives?
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
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itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
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ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).