hgvs VS deepvariant

Compare hgvs vs deepvariant and see what are their differences.

hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs` (by biocommons)
Bioinformatics Genomics sequencing genome-analysis variant-analysis variation
Source Code
hgvs.readthedocs.io
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deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
Tensorflow deep-neural-network Genomics Science Dna sequencing Genome Bioinformatics Deep Learning ngs deepvariant Machine Learning
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hgvs deepvariant
1 5
231 3,078
1.3% 0.9%
8.3 9.1
7 days ago about 1 month ago
Python Python
Apache License 2.0 BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

hgvs

Posts with mentions or reviews of hgvs. We have used some of these posts to build our list of alternatives and similar projects.

deepvariant

Posts with mentions or reviews of deepvariant. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-05-06.

What are some alternatives?

When comparing hgvs and deepvariant you can also consider the following projects:

mixcr - MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

galaxy - Data intensive science for everyone.

16SMaRT - 16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).

masurca

ariba - Antimicrobial Resistance Identification By Assembly

scanpy - Single-cell analysis in Python. Scales to >1M cells.

transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

Biopython - Official git repository for Biopython (originally converted from CVS)

af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

slivar - genetic variant expressions, annotation, and filtering for great good.

nni - An open source AutoML toolkit for automate machine learning lifecycle, including feature engineering, neural architecture search, model compression and hyper-parameter tuning.

DnaChisel - :pencil2: A versatile DNA sequence optimizer

hgvs vs mixcr deepvariant vs galaxy hgvs vs 16SMaRT deepvariant vs masurca hgvs vs ariba deepvariant vs scanpy deepvariant vs transformers deepvariant vs Biopython deepvariant vs af2complex deepvariant vs slivar deepvariant vs nni deepvariant vs DnaChisel