diffexpr
Porting DESeq2 into python via rpy2 (by wckdouglas)
COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets (by urmi-21)
| diffexpr | COVID-19-RNA-Seq-datasets | |
|---|---|---|
| 1 | 3 | |
| 68 | 75 | |
| - | - | |
| 2.7 | 3.8 | |
| 11 months ago | about 2 years ago | |
| Python | Python | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
diffexpr
Posts with mentions or reviews of diffexpr.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-02-23.
-
Introduction to RNAseq and microRNA?
I was able to run deseq2 in Python with this wrapper: https://github.com/wckdouglas/diffexpr
COVID-19-RNA-Seq-datasets
Posts with mentions or reviews of COVID-19-RNA-Seq-datasets.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-30.
- What's so special about covid that it needs multiple vaccines and boosters and all these mandates and passports ?
-
Project ideas
Maybe you could present this with an explanation of each dataset? https://github.com/urmi-21/COVID-19-RNA-Seq-datasets
What are some alternatives?
When comparing diffexpr and COVID-19-RNA-Seq-datasets you can also consider the following projects:
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
RNA-seq-analysis - RNAseq analysis notes from Ming Tang
PyDESeq2 - A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
TPMCalculator - TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
covid-19 - Novel Coronavirus 2019 time series data on cases
cellSNP - Pileup biallelic SNPs from single-cell and bulk RNA-seq data
covid-19-data - Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
scaredi-pi - Simple COVID-19 Ambient Reminder E-Ink Display for Pi