chipseq
chipseq-smk-pipeline
chipseq | chipseq-smk-pipeline | |
---|---|---|
1 | 2 | |
172 | 3 | |
3.5% | - | |
0.0 | 6.3 | |
2 months ago | 4 days ago | |
Nextflow | Python | |
MIT License | - |
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chipseq
-
Nextflow issue
Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]
chipseq-smk-pipeline
What are some alternatives?
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
atlas - ATLAS - Three commands to start analyzing your metagenome data
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Pipeliner - An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
hlatyping - Precision HLA typing from next-generation sequencing data
tech-debt - Technical debt happens when low code quality slows new developments : you have to pay time interests. TechDebt allows you to quantify and track your technical debt.
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
atacseq - ATAC-seq peak-calling and QC analysis pipeline
mag - Assembly and binning of metagenomes
patterns - A curated collection of Nextflow implementation patterns