cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data (by single-cell-genetics)
RNA-seq-analysis
RNAseq analysis notes from Ming Tang (by crazyhottommy)
| cellSNP | RNA-seq-analysis | |
|---|---|---|
| 2 | 1 | |
| 69 | 809 | |
| - | - | |
| 0.0 | 0.0 | |
| almost 2 years ago | over 2 years ago | |
| Python | Python | |
| Apache License 2.0 | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cellSNP
Posts with mentions or reviews of cellSNP.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How to create VCFs for scRNA-Seq data sets
cellSNP is popular and works well.
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Annotating variants in single-cell sequencing data
The authors of vireo have a tool called cellSNP that may be helpful as well.
RNA-seq-analysis
Posts with mentions or reviews of RNA-seq-analysis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-05-01.
-
Looking for advice regarding R-programming and data analysis for immunology/biology projects
One github user crazyhottommy has repositories that cover multiple tools related to several sequencing experiments also including RNA-seq. Really good stuff https://github.com/crazyhottommy/RNA-seq-analysis
What are some alternatives?
When comparing cellSNP and RNA-seq-analysis you can also consider the following projects:
Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
COVID-19-RNA-Seq-datasets - A repository for sharing information on available COVID-19 RNA-Seq datasets
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
cellsnp-lite - Efficient genotyping bi-allelic SNPs on single cells
zarp - The Zavolab Automated RNA-seq Pipeline
R-graph-gallery - A website that displays hundreds of R charts with their code
rnaseq - RNA-seq analyses.
GermlineMutationCalling - An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files