biomisc_R
maftools
| biomisc_R | maftools | |
|---|---|---|
| 3 | 3 | |
| 23 | 421 | |
| - | - | |
| 0.0 | 6.6 | |
| almost 2 years ago | 10 days ago | |
| R | R | |
| MIT License | MIT License |
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biomisc_R
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Splitting multifast file into individual single fasta R
https://github.com/olgatsiouri1996/biomisc_R/blob/main/fasta_manipulation/split_multifasta_to_singlefasta.R this will help. I would recommend using sed to keep only the ids and not the full fasta headers
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how can I have R go through a fasta file opened with seqinr and run certain functions on each sequence?
https://github.com/olgatsiouri1996/biomisc_R/blob/main/sequence_statistics/calculate_biophysical_properties_multifasta.R this might help
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biomisc_R: a repository of command line bioinformatic scripts written in R
while R is a very beginner friendly and popular programming language in bioinformatic circles, there are not many repositories that contain command line scripts that can be easily used. Thats why I created biomisc_R a repository that contains scripts involved in single/multi-fasta/pdb file manipulations, sequence statistics and differential expression analysis. The scripts have been tested on windows 10 build 19041.985 and ubuntu 18.04 with R 3.6.3. if you have any questions and suggestions please let me know!
maftools
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MUtation data visulization in R
Have you tried to debug the error? The maftools repo on GitHub has an active issues section.
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Function to change source code?
Are you able to provide your R script with the data (or a small recreation) that you're using? That would be helpful in recreating what you're seeing and help determine if what's going on. You can always submit a (minimal, reproducible) example and explanation to the maintainers on the issues page -- which they may be able to help you diagnoses.
What are some alternatives?
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getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science