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biomisc_R Alternatives
Similar projects and alternatives to biomisc_R
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biomisc_julia
collection of miscellaneous command line bioinformatic scripts written in julia for speed
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AppSignal
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rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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chromatographR
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
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SaaSHub
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hermiter
Efficient Sequential and Batch Estimation of Univariate and Bivariate Probability Density Functions and Cumulative Distribution Functions along with Quantiles (Univariate) and Nonparametric Correlation (Bivariate)
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tableone
R package to create "Table 1", description of baseline characteristics with or without propensity score weighting
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better biomisc_R alternative or higher similarity.
biomisc_R discussion
biomisc_R reviews and mentions
Posts with mentions or reviews of biomisc_R.
We have used some of these posts to build our list of alternatives
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Splitting multifast file into individual single fasta R
https://github.com/olgatsiouri1996/biomisc_R/blob/main/fasta_manipulation/split_multifasta_to_singlefasta.R this will help. I would recommend using sed to keep only the ids and not the full fasta headers
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how can I have R go through a fasta file opened with seqinr and run certain functions on each sequence?
https://github.com/olgatsiouri1996/biomisc_R/blob/main/sequence_statistics/calculate_biophysical_properties_multifasta.R this might help
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biomisc_R: a repository of command line bioinformatic scripts written in R
while R is a very beginner friendly and popular programming language in bioinformatic circles, there are not many repositories that contain command line scripts that can be easily used. Thats why I created biomisc_R a repository that contains scripts involved in single/multi-fasta/pdb file manipulations, sequence statistics and differential expression analysis. The scripts have been tested on windows 10 build 19041.985 and ubuntu 18.04 with R 3.6.3. if you have any questions and suggestions please let me know!
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Stats
Basic biomisc_R repo stats
3
24
0.0
about 4 years ago
olgatsiouri1996/biomisc_R is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of biomisc_R is R.
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