bakta vs FastANI

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids (by oschwengers)

Source Code

Suggest alternative

Edit details

FastANI

Fast Whole-Genome Similarity (ANI) Estimation (by ParBLiSS)

microbial-genomics

Source Code

Suggest alternative

Edit details

Our great sponsors

WorkOS - The modern identity platform for B2B SaaS

InfluxDB - Power Real-Time Data Analytics at Scale

SaaSHub - Software Alternatives and Reviews

Our great sponsors

bakta		FastANI
	Project
1	Mentions	1
389	Stars	344
-	Growth	1.2%
8.5	Activity	3.7
about 2 months ago	Latest Commit	4 months ago
Python	Language	C++
GNU General Public License v3.0 only	License	Apache License 2.0

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bakta

Posts with mentions or reviews of bakta. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-11.

orfs in DNA
3 projects | /r/bioinformatics | 11 Oct 2022

If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).

FastANI

Posts with mentions or reviews of FastANI. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-03-29.

awesome-genome-visualization - my futile attempt to catalog all sorts of genome visualization tools (currently at 286 tools with screenshots now!)
2 projects | /r/bioinformatics | 29 Mar 2021

FastANI (https://github.com/ParBLiSS/FastANI)

What are some alternatives?

When comparing bakta and FastANI you can also consider the following projects:

prokka - :zap: :aquarius: Rapid prokaryotic genome annotation

pyGenomeViz - A genome visualization python package for comparative genomics

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

awesome-genome-visualization - A list of interesting genome browser or genome-browser-like implementations

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

dfast_core - DDBJ Fast Annotation and Submission Tool

QUEEN - QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources