ariba
MGEfinder
ariba | MGEfinder | |
---|---|---|
1 | 1 | |
155 | 97 | |
2.6% | - | |
3.0 | 0.0 | |
7 months ago | 7 months ago | |
Python | Python | |
GNU General Public License v3.0 or later | MIT License |
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ariba
MGEfinder
-
Predicting Antimicrobial Resistance in a Sequence
To identify MGE’s you could try: https://github.com/bhattlab/MGEfinder
What are some alternatives?
abricate - :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
abritamr - A pipeline for running AMRfinderPlus and collating results into functional classes
galaxy - Data intensive science for everyone.
edgecase - A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
16SMaRT - 16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
hgvs - Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.