Scoary VS GTDBTk

Compare Scoary vs GTDBTk and see what are their differences.

Scoary

Pan-genome wide association studies (by AdmiralenOla)
gene-presence-absence Gwas pan-genome bacteria Genomics
Source Code
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GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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Scoary GTDBTk
2 1
137 437
- 5.3%
10.0 7.5
over 1 year ago 24 days ago
Python Python
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

Scoary

Posts with mentions or reviews of Scoary. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-11-28.

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing Scoary and GTDBTk you can also consider the following projects:

plassembler - Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

scoary-2 - Calculate assocations between genes and traits

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

merqury - k-mer based assembly evaluation

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

sgkit - We've moved to https://github.com/sgkit-dev/sgkit

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

Perfect-bacterial-genome-tutorial

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

pyani - Application and Python module for average nucleotide identity analyses of microbes.

Scoary vs plassembler GTDBTk vs kraken-biom Scoary vs scoary-2 GTDBTk vs CAT_pack Scoary vs merqury GTDBTk vs MMseqs2 Scoary vs sgkit GTDBTk vs dada2 Scoary vs Perfect-bacterial-genome-tutorial GTDBTk vs classify-genomes GTDBTk vs bakta GTDBTk vs pyani