GAAS
mag
| GAAS | mag | |
|---|---|---|
| 1 | 2 | |
| 195 | 182 | |
| -0.5% | 1.6% | |
| 2.6 | 9.4 | |
| 5 months ago | 6 days ago | |
| Perl | Nextflow | |
| GNU General Public License v3.0 only | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
GAAS
-
How to download the GTF file for my organism from NCBI? (using featureCounts to obtain gene count data from reads)
In fact someone has done a review of the main conversion tools here.
mag
-
How do you use Termux?
So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
- Is it possible to assemble a complete bacterial genome using short reads?
What are some alternatives?
Utilities - Useful things
SqueezeMeta - A complete pipeline for metagenomic analysis
learn-anything.xyz - Organize world's knowledge, explore connections and curate learning paths
atlas - Manage your database schema as code
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
spades - SPAdes Genome Assembler
nextflow - A DSL for data-driven computational pipelines
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Atlas - 🚀 An open and lightweight modification to Windows, designed to optimize performance, privacy and security.
bgfx - Cross-platform, graphics API agnostic, "Bring Your Own Engine/Framework" style rendering library.
xray-16 - Improved version of the X-Ray Engine, the game engine used in the world-famous S.T.A.L.K.E.R. game series by GSC Game World. Join OpenXRay! ;)