DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files) (by Edinburgh-Genome-Foundry)
gggenomes
A grammar of graphics for comparative genomics (by thackl)
DnaFeaturesViewer | gggenomes | |
---|---|---|
2 | 3 | |
547 | 551 | |
2.0% | - | |
5.9 | 8.6 | |
6 months ago | about 2 months ago | |
Python | R | |
MIT License | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
DnaFeaturesViewer
Posts with mentions or reviews of DnaFeaturesViewer.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-09-10.
-
Software to make in-scale illustrations of genomic locations
If you can build a Python environment and do a little coding, DnaFeaturesViewer or pyGenomeViz would be good choices. You can generate the following figure from a Genbank file with about 10 lines of code. Of course, you can specify the range of coordinates to be plotted.
-
pyGenomeViz: A genome visualization python package for comparative genomics
If you need to display annotations/genes within a single genome, DnaFeaturesViewer may be another good option.
gggenomes
Posts with mentions or reviews of gggenomes.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-09-10.
-
Software to make in-scale illustrations of genomic locations
If you’re R proficient, gggenomes: https://github.com/thackl/gggenomes
-
pyGenomeViz: A genome visualization python package for comparative genomics
In R, there are a wide variety of packages that provide APIs for genome visualization, such as genoPlotR and gggenomes.
- Whole genome synteny plots
What are some alternatives?
When comparing DnaFeaturesViewer and gggenomes you can also consider the following projects:
pyGenomeViz - A genome visualization python package for comparative genomics
gggenes - ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
quast - Genome assembly evaluation tool
gganimate - A Grammar of Animated Graphics
orthologr - Genome wide orthology inference and dNdS estimation
Synima - Synteny Imager
patchwork - The Composer of ggplots
redotable - A dotplot application for DNA/RNA sequence
calendR - Ready to print calendars with ggplot2