Clairvoyante VS dance

Compare Clairvoyante vs dance and see what are their differences.

Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing (by aquaskyline)
variant-calling Deep Learning Bioinformatics computational-biology
Source Code
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dance

DANCE: a deep learning library and benchmark platform for single-cell analysis (by OmicsML)
Bioinformatics dance Data Science Deep Learning graph-neural-networks Machine Learning multimodality Python single-cell spatial-transcriptomics Benchmark computational-biology single-cell-rna-seq single-cell-rna-sequencing
Source Code
pydance.readthedocs.io
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Clairvoyante dance
1 1
172 323
- 4.0%
0.0 8.7
5 months ago 2 days ago
Python Python
BSD 3-clause "New" or "Revised" License BSD 2-clause "Simplified" License
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Clairvoyante

Posts with mentions or reviews of Clairvoyante. We have used some of these posts to build our list of alternatives and similar projects.
  • Installing packages for python2 with pip when they're already installed for python3
    1 project | /r/learnpython | 29 Jun 2021
    Hi! This might be a dumb question, but I am stuck at this problem. I am using Ubuntu 20.04 with Anaconda and I have both Python 2.7 and 3.7 on my system. I am trying to use this tool: https://github.com/aquaskyline/Clairvoyante but I am running into problems that there are packages, such as numpy and intervaltree that are installed for python3 but not for python2. When I run a python2 script that requires this package, I am getting errors like

dance

Posts with mentions or reviews of dance. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing Clairvoyante and dance you can also consider the following projects:

pepper - PEPPER-Margin-DeepVariant

mlgauge - A simple library to benchmark the performance of machine learning methods across different datasets.

OpenChem - OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

haiku-geometric - A collection of graph neural networks implementations in JAX

CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

mokapot - Fast and flexible semi-supervised learning for peptide detection in Python

dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js

alfie - A neural network for alignment-free, kingdom-level classification of eDNA

biotite - A comprehensive library for computational molecular biology

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Clairvoyante vs pepper dance vs mlgauge Clairvoyante vs OpenChem dance vs haiku-geometric Clairvoyante vs CNApy dance vs mokapot Clairvoyante vs dash-cytoscape dance vs alfie Clairvoyante vs biotite Clairvoyante vs metaGEM